Cis-meQTLs across different cancer types

In cis-meQTL analysis, we identified 8,028,964 cis-meQTLs at FDR < 0.05 and |r|>=0.3 in 23 cancer types for users to search or browse.

 

e.g., "BLCA"
e.g., "rs11047888"
e.g., "cg25763538"
e.g., "KRAS"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Methylation probe
Methylation position (hg19)
Gene symbol
Beta
t-stat
r
P-valule
Display
BLCA rs2297415 chr1:227172903 G/A cg10327440 chr1:227177885 CDC42BPA -1.14 -30.81 -0.85 2.23E-105 Box Plot
BLCA rs2297416 chr1:227172935 C/G cg10327440 chr1:227177885 CDC42BPA -1.13 -30.34 -0.84 1.45E-103 Box Plot
BLCA rs2297418 chr1:227192579 A/C cg10327440 chr1:227177885 CDC42BPA -1.14 -31.8 -0.85 3.77E-109 Box Plot
BLCA rs2516834 chr2:99771533 C/T cg15544633 chr2:99771531 LIPT1;TSGA10 1.18 33.57 0.86 1.0E-115 Box Plot
BLCA rs2632260 chr2:99771590 G/T cg15544633 chr2:99771531 LIPT1;TSGA10 1.18 33.57 0.86 1.0E-115 Box Plot
BLCA rs2632284 chr2:99775865 C/G cg15544633 chr2:99771531 LIPT1;TSGA10 1.16 32.33 0.86 4.11E-111 Box Plot
BLCA rs2676234 chr5:13672799 C/G cg27586797 chr5:13664584 NA -1.09 -30.52 -0.84 2.89E-104 Box Plot
BLCA rs2692041 chr2:30696067 G/A cg12454169 chr2:30669597 LCLAT1 1.26 31.24 0.85 5.27E-107 Box Plot
BLCA rs2736605 chr1:156174475 T/C cg24450063 chr1:156163899 SLC25A44 1.18 30.53 0.84 2.72E-104 Box Plot
BLCA rs2758615 chr1:156158367 T/C cg24450063 chr1:156163899 SLC25A44 1.18 30.23 0.84 3.76E-103 Box Plot
BLCA rs2758616 chr1:156160358 T/C cg24450063 chr1:156163899 SLC25A44 1.18 30.08 0.84 1.46E-102 Box Plot
BLCA rs2758618 chr1:156160892 T/C cg24450063 chr1:156163899 SLC25A44 1.18 30.08 0.84 1.46E-102 Box Plot
BLCA rs2758619 chr1:156162559 A/G cg24450063 chr1:156163899 SLC25A44 1.18 30.08 0.84 1.46E-102 Box Plot
BLCA rs2842857 chr1:156168736 T/C cg24450063 chr1:156163899 SLC25A44 1.18 30.31 0.84 1.97E-103 Box Plot
BLCA rs2842864 chr1:156159217 G/A cg24450063 chr1:156163899 SLC25A44 1.18 30.08 0.84 1.46E-102 Box Plot